OceanOmics

Minderoo OceanOmics Centre at UWA

Applying marine genomics to transform ocean conservation


A partnership between

 

    



extracting a substance from test tube
extracting a substance from test tube
MISSION
Developing and applying genomics tools to transform biodiversity discovery and conservation.
Minderoo OceanOmics Centre at UWA
Minderoo OceanOmics Centre at UWA
Located on the UWA Crawley Campus in the Bayliss Building, Minderoo OceanOmics Centre at UWA is a world-class facility dedicated to using groundbreaking genomics-based research to characterise marine biodiversity. Focusing on Australia’s native marine vertebrates and regional marine ecosystems, we integrate advanced genomics infrastructure, specialist expertise, and strong collaborative networks to generate large-scale Environmental DNA (eDNA) and whole-genome sequencing datasets. Our work establishes a genomics-enabled foundation for biodiversity discovery, ecological understanding, informed conservation-management and the development of innovative biomonitoring solutions.

OceanOmics Centre staff work closely alongside research and teaching staff from various UWA academic schools and the Oceans Institute in the nearby IOMRC building.

ENVIRONMENTAL DNA

Environmental DNA (eDNA) refers to the traces of genetic material that organisms shed into their surroundings via sloughed skin cells or scales, waste, mucus, or other biological matter. By collecting environmental samples such as seawater, we can target these DNA fragments to identify which species were recently present in any ecosystem. This non-invasive technique enables high-resolution biodiversity monitoring across extensive spatial scales, without the need for direct observation or physical collection. At the OceanOmics Centre, we have sampled across Australia’s marine regions and are now using eDNA to characterise marine biodiversity from across the Tree of Life, from shallow coastal environments to the deep sea, generating critical data to support conservation research, ecosystem management, and marine policy. 

 

REFERENCE GENOMIC RESOURCES

Characterising biodiversity based on eDNA requires comparison with a library of reference DNA sequences. Snippets of DNA found in the environment can then be checked against this library to identify all the species present in the samples. At program conception, fewer than four per cent of the ~20,000 known species of marine vertebrates were represented by a reference-quality whole genome sequence in public sequence repositories. With our collaborators, OceanOmics Centre is creating high-quality, publicly accessible reference genomic resources for thousands of marine species and showcasing how whole genome data can inform our understanding of species biology and their conservation management.

OCEANOMICS CENTRE FACILITIES & CAPABILITIES

Oceanomics

Specialist genomics workflows

  • eDNA sequencing, and established pipelines for QC and taxonomic assignment
  • Whole genome shotgun resequencing, and established pipelines for QC and de-novo draft genome assembly
  • High-quality reference genome sequencing and established pipelines for QC and de-novo assembly
  • Tools for data visualisation
  • High performance computing access
  • OceanOmics

    Fit-for-purpose lab spaces

  • Sample storage and curation
  • eDNA extraction
  • Genomic DNA/RNA extraction
  • Library preparation and sequencing
  • Oceanomics

    Dedicated operational, scientific and research staff

  • Operations and facilities manager
  • Dedicated staff supporting data generation, training and education opportunities







  • Oceanomics

    Sequencing technologies

  • Illumina Sequencing By Synthesis
  • PacBio highly accurate long reads
  • Oxford Nanopore Technologies direct native molecule sequencing


  • Oceanomics

    Research collaboration

  • Academic inputs into research publications
  • Collaboration and in-kind contribution for funding applications
  • Design of eDNA survey and conservation genomics projects
  • Bespoke solutions to biodiversity research
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    OceanomicS CENTRE TEAM MEMBERS

    Shannon Corrigan

    Shannon Corrigan

    OCEANOMICS CENTRE LEAD

    Dr Shannon Corrigan is an empirical biologist that uses modern genomics approaches to pursue broad research interests that include the evolutionary biology, ecology, and conservation of marine vertebrates, particularly chondrichthyans (cartilaginous fishes: sharks, rays, chimaeras).
    Current research activities include leading the OceanOmics Centre team to develop eDNA as a scalable biomonitoring tool and generating high-quality reference genome resources for marine vertebrates.

    Ibrahim Faseeh

    Ibrahim Faseeh

    MANAGER, RESEARCH OPERATIONS

    Ibrahim has a strong background in quality assurance, operational management, and regulatory compliance within life science research.
    Ibrahim’s primary focus is to ensure the smooth operations of OceanOmics Centre laboratories by establishing a commitment to health and safety, resource management, and sustainability.

    Emma de Jong

    Emma de Jong

    BIOINFORMATICS LEAD 

    Dr Emma de Jong is a bioinformatician and data scientist with expertise in systems biology/immunology. Emma’s current research focuses on generating high-quality reference genomes for Lutjanidae (snappers), a group of ecologically and economically important fisheries species, and using comparative genomics to map their immune gene repertoire.
    By integrating genomics and immunology, her work aims to uncover how these species are equipped to respond to environmental stressors and pathogens, providing insights into their resilience in a changing climate. Emma also leads the OceanOmics Centre bioinformatics team.

    Georgia Nester

    Georgia Nester

    Research Fellow

    Dr Georgia Nester is is a molecular ecologist leading deep-sea environmental DNA (eDNA) research at the Minderoo OceanOmics Centre at UWA. Her work develops and applies genomic tools to characterise biodiversity in some of the world's least explored marine ecosystems.

    At the OceanOmics Centre, Georgia leads deep-sea eDNA initiatives and contributes to whole genome sequencing efforts, advancing new approaches for deep-sea biodiversity discovery and monitoring.

    Sarah Kwong

    Sarah Kwong

    Research Fellow

    Sarah is a molecular ecologist interested in developing and applying novel genomic approaches for marine research. Her background spans environmental DNA (eDNA), long-read sequencing, and epigenetics.
    At the OceanOmics Centre, she develops genomic methods that expand the capabilities of eDNA for marine biodiversity monitoring and conservation, with the goal of moving eDNA beyond species detection towards richer ecological and biological insights.

    Abinaya Meenakshisundaram

    Abinaya Meenakshisundaram

    Research Fellow

    Abinaya is a conservation geneticist specialising in environmental DNA (eDNA), population genetics, and genomics, with a particular focus on whale sharks. Her research aims to develop non-invasive methods for monitoring the population genetics and abundance of marine megafauna using eDNA.
    At the OceanOmics Centre, in collaboration with AIMS@UWA, Abi is developing species-specific DNA marker panels for whale sharks that can be sequenced from seawater to enable individual identification and estimates of genetic diversity and abundance of the species. She is also leading efforts to conduct a global whole-genome-based population genetic study of whale sharks to improve scientific knowledge and support conservation of this threatened species.

    Adrianne Doran

    Adrianne Doran

    LAB OPERATIONS LEAD

    Adrianne is a molecular biologist with a background in clinical genomics. At OceanOmics Centre, Adrianne drives high throughput sequencing using long- and short-read sequencing technologies to construct eDNA biodiversity datasets and high-quality reference genome resources of marine vertebrates.

    Rita Franco-Santos

    Rita Franco-Santos

    PROJECT MANAGER, ENGAGEMENT PROGRAMS

    Rita is a marine scientist with experience in various fields (mainly zooplankton (feeding) ecology and applications of biomarkers to food web and blue carbon research) and ecosystems (from the tropics to the poles). She is the project manager for engagement programs and training initiatives at the OceanOmics Centre. Rita also leads the Australia & New Zealand Node of the Early Career Ocean Professionals (ECOP) Programme (UN Ocean Decade) and is a Board Member for the Association for the Sciences of Limnology and Oceanography (ASLO).

    Laura Missen

    Laura Missen

    SCIENTIFIC OFFICER

    Laura Missen is a marine biologist and molecular ecologist with a background in phylogenetics and environmental DNA.
    At the OceanOmics Centre, Laura drives development and automation of laboratory techniques for eDNA metabarcoding of marine vertebrates and supports the generation of novel eDNA techniques along with high-quality reference genomes.

    Liam Anstiss

    Liam Anstiss

    SCIENTIFIC OFFICER

    Liam Anstiss is a molecular scientist with a background in high throughput molecular diagnostics and environmental microbiology (biomining).
    At OceanOmics Centre, his focus is on optimisation of whole genome sequencing workflows, to create reference genomes of marine vertebrates.

    Ebony Thorpe

    Ebony Thorpe

    RESEARCH TECHNICIAN

    Ebony is a marine science honours graduate with a background in aquaculture husbandry, parasite management, and sustainable production research. As a research technician at OceanOmics Centre, she supports deep-sea genomic and eDNA-based biodiversity surveys. With extensive at-sea experience, she plays a key role in field operations and is particularly interested in developing scalable genomic tools to better understand and protect deep-sea ecosystems.

    Anna Depiazzi

    Anna Depiazzi

    RESEARCH TECHNICIAN

    Anna Depiazzi is a conservation biology graduate with a background in animal health and wildlife biology. Anna is particularly passionate about conserving local biodiversity and is excited about the integration of molecular biology and genomic techniques in conservation science. At OceanOmics Centre, she contributes to a wide range of work, from field sampling through to eDNA and whole genome sequencing.

    Tsz Ching Wong

    Tsz Ching Wong

    Research Technician

    Tsz Ching is a molecular scientist with experience in high-throughput molecular diagnostics, specialising in qPCR and sequencing. Prior to joining OceanOmics Centre, she worked in a clinical molecular laboratory supporting large-scale molecular testing and workflow optimisation.
    At OceanOmics Centre, she contributes to the generation of high-quality reference genomes projects for marine vertebrates, from sample preparation through to sequencing.

    Adam Bennett

    Adam Bennett

    Bioinformatics Research Officer

    Adam is a computer scientist and bioinformatician. Adam is working on the development of analytical software, tools and pipelines to analyse eDNA and genomic sequencing data for better measuring and understanding life in our ocean.

    Lauren Huet

    Lauren Huet

    Bioinformatics Research Officer

    Lauren is a marine biologist and bioinformatician with a background in species identification and phylogenomics. At OceanOmics Centre, Lauren contributes to the generation of a high-quality reference genome library for marine vertebrates. Lauren is also particularly interested in exploring novel techniques for species identification and abundance estimates from eDNA samples.

    Tyler Peirce

    Tyler Peirce

    Bioinformatics Research Officer

    Tyler is a marine biologist and bioinformatician with a background in genetics and transcriptomics. He is particularly interested in improving the accessibility, reproducibility, and scalability of genomics research. At the OceanOmics Centre, Tyler develops and maintains a centralised SQL database and automates genomic data processing pipelines to support a broad range of Centre activities, including the generation of high-quality reference genome sequences, as well as organising and integrating sequencing data from different technologies and a wide range of marine vertebrate species.

    Olivia Nguyen

    Olivia Nguyen

    BIOINFORMATICS RESEARCH OFFICER

    Olivia is a bioinformatician with a background in genomics and transcriptomics. She is particularly interested in the accessibility and reproducibility of genomics research and the responsible sharing of marine biodiversity data at scale.

    At the OceanOmics Centre, Olivia is responsible for the release of reference genomes, mitogenomes, and eDNA data to global repositories including NCBI, ENA, OBIS, and GBIF, and contributes across a range of bioinformatics pipelines supporting eDNA metabarcoding analysis, reference genome generation, and mitogenome assembly across a wide range of marine vertebrate species.

    Anushka-Sandeepa-Dissanayaka

    Anushka Sandeepa Dissanayaka M.

    BIOINFORMATICS RESEARCH ASSISTANT

    Anushka is a data scientist with interests in bioinformatics, data engineering, and research data management. At the OceanOmics Centre, he contributes to the development of data systems and workflows that improve the management, integration, and accessibility of eDNA and genomics datasets. His work focuses on database development, metadata management, data integration, and research data delivery.

    He is currently involved in developing a centralised database framework that supports the organisation, tracking, and accessibility of genomic and environmental DNA data across OceanOmics Centre projects. Anushka is passionate about improving the accessibility, reproducibility, and long term value of scientific data through robust and sustainable data solutions.

    Frauke_Ixfeld

    Frauke E. Ixfeld

    LABORATORY RESEARCH ASSISTANT

    Frauke is a Research Assistant with interests in environmental genomics, molecular ecology, and marine conservation.
    At the OceanOmics Centre, she supports eDNA and genomic DNA laboratory workflows, contributing to sample processing, laboratory operations, and quality assurance. Drawing on experience across marine research, biodiversity monitoring, and data management, Frauke is particularly interested in using genomic technologies to better understand and conserve marine ecosystems.

    Students

    • Zoe Salyapongse, PhD Candidate
    • Sara Krause, PhD Candidate
    • Jessica Pearce, PhD Candidate (2023-present)
    • Jamie Botting, MSc Candidate (2024)
    • Seth Papirny, MSc Candidate
    • Laura Sujecki, MSc Candidate

    Visiting Researchers

    • Dr Michael Bunce – Minderoo Foundation
    • Dr Steve Burnell – Minderoo Foundation
    • Dr Priscila Goncalves – Minderoo Foundation
    • Dr Eric Raes – Minderoo Foundation
    • Dr Matt Fraser – Minderoo Foundation
    • Dr Jordan Goetze – Minderoo Foundation
    • Dr Nicole Foster – Minderoo Foundation
    • Marcelle Ayad – Minderoo Foundation

     

    Alumni

    Dr Lara Parata, Dr Philipp Bayer, Dr Madelyn Cooper,
    Dr Julie Robidart, Dr Richard Edwards, Dr Sebastian Rauschert,
    Dr Rachel Jamieson, Dr Sang Huynh, Hayley Hogan. 

    Explore with us

    Looking to join our team? Over the coming years, there will be opportunities for students, professional and academic staff. 

    The OceanOmics Centre is multidisciplinary and welcomes new research collaborations.  Join the Oceans Institute community to stay up to date with opportunities like this and more. 

     

    Reach out to us at [email protected]

     


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