Assoc/Prof Daniel Murphy
Soil Biology Group Leader/Associate Professor
Biography
Daniel started work at UWA in 1999 after spending 4 years conducting agricultural research in the UK. He currently manages a research program that addresses issues relating to the development of sustainable management practices for agricultural, horticultural and mine-site rehabilitated systems. Soil biological fertility is a major focus of this research where staff and students employ a range of biochemical, enzymatic, isotopic and molecular tools to study microbial nutrient cycling and issues relating to microbial function and diversity. Research is primarily funded through the Australian Grains Research and Development Corporation, the Australian Research Council and industry partners.
Key research
- Microbial nutrient cycling
- Microbial ecology
- Soil Biological Fertility
- Farming Systems
- Isotope application to soil research
Major research interests
- Soil biology/biochemistry
- Carbon sequestration
- Function of soil organic matter
- Microbial ecology
- Greenhouse gases
- Nutrient cycling in terrestrial ecosystems
- Soil biological limitations to crop production
- Soil quality
- Mine site rehabilitation
Qualifications
PhD W.Aust.
Publications
Selected papers (since appointment at UWA in 1999):
2005
• Flavel T.C., Murphy D.V., Lalor B.M. and Fillery I.R.P. (2005) Gross N mineralization rates after application of composted grape marc to soil. Soil Biology & Biochemistry in press
• Osler G.H.R. and Murphy D.V. (2005) Oribatid mite species richness and soil organic matter fractions in agricultural and native vegetation soils in Western Australia. Applied Soil Ecology in press.
• Luxhøi J., Recous S., Fillery I.R.P., Murphy D.V. and Jensen L.S. (2005) Comparison of 15NH4+ pool dilution techniques to measure gross N fluxes in a coarse textured soil. Soil Biology & Biochemistry 37, 569-572.
2004
• Cookson W.R. and Murphy D.V. (2004) Quantifying the contribution of dissolved organic matter to soil nitrogen cycling using 15N isotopic pool dilution. Soil Biology & Biochemistry 36, 2097-2100.
• Jones D.L., Shannon D., Murphy D. V. and Farrar J. (2004). Role of dissolved organic nitrogen (DON) in soil N cycling in grassland soils. Soil Biology & Biochemistry 36, 749-756.
• Murphy D.V., Stockdale E.A., Hoyle F.C., Smith J.U., Fillery I.R.P., Milton N., Cookson W.R., Brussaard L. and Jones D.L. (2004). Matching supply with demand – principles, practice and prediction. In: Controlling N flows and losses. Eds. DJ Hatch, D Chadwick, SC Jarvis and JA Roker. Wageningen Academic Press. pp 101-112.
2003
• Abbott L. K. and Murphy, D. V. (2003). What is soil biological fertility and how is it assessed? In: Soil Biological Fertility – A key to sustainable land use in agriculture. Eds. L. K. Abbott and D. V. Murphy. Kluwer Academic Publishers. pp. 1-15.
• Murphy, D. V., Stockdale, E. A., Brookes, P. C. and Goulding, K. W. T. (2003). Impact of microorganisms on chemical transformations in soil. In: Soil Biological Fertility – A key to sustainable land use in agriculture. Eds. L. K. Abbott and D. V. Murphy. Kluwer Academic Publishers. pp. 37-59.
• Murphy, D. V., Recous, S., Stockdale, E. A., Fillery, I. R. P., Jensen, L. S., Hatch, D. J. and Goulding, K. W. T. (2003) Gross nitrogen fluxes in soil: Theory, measurement and application of 15N pool dilution techniques. Advances in Agronomy 79, 69-118.
2002
• Hatch, D., Goulding, K., and Murphy, D. (2002). Nitrogen as a pollutant from agriculture in surface and ground water. In: Agriculture, Hydrology and Water Quality. Eds. P. Haygarth and S. Jarvis; CABI. Section 1 – Agriculture, Chapter 1, pp. 7-27.
• Stockdale, E. A., Hatch, D. J., Murphy, D. V., Ledgard, S. F. and Watson, C. J. (2002). Verifying the nitrification to immobilisation ratio (N/I) as a key determinant of potential nitrate loss in grassland and arable soils. Agronomie 22, 831-838.
2001
• Goulding, K. W. T., Murphy, D. V., Macdonald, A., Stockdale, E. A., Gaunt, J. L., Blake, L., Ayaga, G. and Brookes, P. C. (2001). The role of soil organic matter and manures in sustainable nutrient cycling. In: Sustainable Management of Soil Organic Matter. Eds. R. M. Rees, B. C. Ball, C. D. Campbell and C. A. Watson. CABI. pp. 221-232.
• Murphy, D. V., Dise, N., Goulding, K. W. T., Macdonald, A. J., Peake, C., Redfern, P. and Stockdale, E. A. (2001). Can concepts of N saturation developed for forest systems be applied in arable soils? In: Sustainable Management of Soil Organic Matter. Eds. R. M. Rees, B. C. Ball, C. D. Campbell and C. A. Watson. CABI. pp. 233-238.
2000
• Bhogal, A., Murphy, D. V., Fortune, S., Shepherd, M. A., Hatch, D. J., Jarvis, S. C., Gaunt, J. L. and Goulding, K. W. T. (2000). Distribution of nitrogen pools in the soil profile of undisturbed and reseeded grasslands. Biology and Fertility of Soils 30, 356-362.
• Murphy, D. V., Macdonald, A. J., Stockdale, E. A., Goulding, K. W. T., Fortune, S., Gaunt, J. L., Poulton, P. R., Wakefield, J. A., Webster, C. P. and Wilmer, W. S. (2000). Soluble organic nitrogen in agricultural soils. Biology and Fertility of Soils 30, 374-387.
1999
• Murphy, D. V., Bhogal, A., Shepherd, M. A., Goulding, K. W. T., Jarvis, S. C., Barraclough, D. and Gaunt, J. L. (1999). Comparison of 15N labelling methods to measure gross nitrogen mineralisation. Soil Biology & Biochemistry. 31, 2015-2024.
• Murphy, D. V., Fortune, S., Wakefield, J. A., Stockdale, E. A., Poulton, P. R., Webster, C. P., Wilmer, W. S., Goulding, K. W. T. and Gaunt, J. L. (1999). Assessing the importance of soluble organic nitrogen in agricultural soils. In: Managing risks of nitrates to humans and the environment. Ed. W. Wilson. Royal Society of Chemistry, Cambridge. pp. 65-86.
Roles, responsibilities and expertise
Development of equipment to measure gross N fluxes in coarse textured soils.
Established soil organic matter fractionation protocol for WA soils.
Memberships
British Society Soil Science
American Society Soil Science
Previous positions
1998 – 1999 Research Scientist
IACR-ROTHAMSTED
Soil Science Department, Harpenden, Hertfordshire, AL5 2JQ, U.K.
The focus of this research was to use isotopic pool dilution techniques to further develop a process-based understanding of nutrient cycling in agricultural, grassland and natural systems. The ratio of gross nitrification to ammonium immobilisation was assessed as an index of N loss against modelled and measured leaching rates. The same principles were also used to assess the concept of ‘N saturation’ across a European N deposition gradient. Research also addressed the movement and loss of dissolved organic matter.
1995 – 1998 Postdoctoral Research Scientist
IACR-ROTHAMSTED
Soil Science Department, Harpenden, Hertfordshire, AL5 2JQ, U.K.
My contract was a joint appointment between Rothamsted and the Institute of Grassland and Environmental Research (IGER). Overall focus of this research was to develop detailed data sets on nutrient cycling and soil organic matter for model development (mechanistic; based on turnover of soil organic matter fractions) and evaluation (SUNDIAL/Roth-C).
Collaborators: Dr Steve Jarvis and Dr David Hatch (IGER), Dr Decland Barraclough (Reading University), Dr Mark Shepherd (ADAS)
Teaching
Undergraduate lecturing:
·Soil Biology and Plant Nutrition SBPN240
Useful links
WWW.SOILHEALTH.COM
WWW.CLR.UWA.EDU.AU
Current projects
Current research grants:
1. Overcoming soil biological constraints to yield - Grains Research and Development Corporation.
The removal of biological constraints to potential crop yield, as defined by water use efficiency, is a priority for many areas of Australia and has been recognised as a strategic investment area relevant to the GRDC-Soil Biology Initiative. The focus of this project is therefore to i) determine the specific aspects of soil biology in constraining yield potential, (ii) identify strategies to overcome these limitations and iii) determine the potential for soil biology to contribute to a profitable and viable farming system. This project has a considerable field trial component through strong links to farming groups throughout Western Australia. The more fundamental research is being conducted by Ms Frances Hoyle (PhD student) who is examining how the microbial community can be manipulated and ‘triggered’ into activity with the purpose of better aligning microbial nutrient cycling with crop demand. Staff associated with this project are: Dr Daniel Murphy (Project Leader), Ms Frances Hoyle, Professor Lyn Abbott and Dr Bill Bowden (WADA). PhD supervisors are Dr Daniel Murphy, Professor Phillip Brookes (Rothamsted Research, UK), Dr Ian Fillery (CSIRO) and Professor Lyn Abbott. Collaborators include: Dr James Fischer (WADA), Dr Kathy Ophel-Keller (SARDI), Dr Jackie Nobbs (SARDI).
2. Biological indicators of soil quality - Grains Research and Development Corporation
Within previously funded soil indicator research UWA staff developed a package of soil biological, chemical and physical indicators aimed at identifying the major soil constraints to agricultural crop production in Western Australian farming systems. This continuation is aimed at (i) extending the benchmarking program to other agro-ecological zones and (ii) assessing the capacity of mid infrared reflectance technology to be calibrated against a range of soil properties. Once calibrated for Western Australian soils mid infrared prediction will enable the rapid development of farm soil maps for a number of key soil parameters. This will enable spatial soil management for the purpose of identifying the location and extent of soil constraints to crop production. Research staff associated with this project are: Dr Daniel Murphy (Project Leader) and Dr Craig Russell.
3. Identifying benefits of composted soil amendments to vegetable production - RIRDC & WADA
This PhD project seeks to increase both the economic viability and the environmental sustainability of vegetable production through the development of production systems based on the use of compost. The PhD student (Ms Tamara Flavel) is based at UWA but also conducts fieldwork in Victoria. The area of study is expected to contribute to our knowledge of soil organic matter build up within intensive vegetable production systems, principally on sandy soils. Supervisors for this project are Dr Daniel Murphy and Professor Lyn Abbott.
4. Quantifying the re-establishment of soil processes and the impact of fire management on rehabilitated bauxite mines in Western Australia (2004-2006) – Australian Research Council & ALCOA.
A major objective in the rehabilitation of bauxite mines in the jarrah forest of Western Australia is to return a self-sustaining ecosystem. Nutrient cycling and microbial diversity are key components of the functioning of the rehabilitated system; but little is know about the resilience of these processes in jarrah forests. In collaboration with scientists at ALCOA we aim to determine how rehabilitated mine sites function (at a soil process level) in comparison to natural systems, and define the resilience of the soil microbial communities and associated soil processes (e.g. nutrient cycling) within rehabilitated sites with respect to further disturbances such as fire. This is of specific relevance to restoring biodiversity within rehabilitated Jarrah forests and establishing a time frame for their return to state government management. Ms Briony Lalor has been appointed as a PhD student to this project. Her aspect of this project will focus on quantify the impact of prescribed fire on the resilience of rehabilitated sites according to their ability to re-establish soil microbial structure, diversity, function and processes following burning. Staff associated with this project are: Dr Daniel Murphy (Chief Investigator), Dr Carl Grant (Partner Investigator, ALCOA), Dr William Cookson (Collaborator), Professor Lyn Abbott (Chief Investigator), Dr Natasha Banning (Research Associate) and Ms Anna Millar (Technician).
5. Maintenance of Australia’s soil resource – water, microbial diversity and function – ARC Discovery
Water availability is the major limitation to biological activity in semi-arid regions of Australia. We will aim to quantify the dynamic relationships between organic matter cycling, microbial diversity and function in relation to seasonality, drought and land management. This will lead to a comprehensive understanding of how water mediates the diversity of soil organisms and their associated functions. This is of specific relevance to maintaining biodiversity within the unique soil ecosystems that have developed under Australian climatic conditions. This discovery grant supports Dr William Cookson as an ARC Research Fellow. Additional staff associated with this project are: Dr Daniel Murphy (Chief Investigator), Dr Philip O’Brien (Chief Investigator, Murdoch University) and Dr Keith Goulding (Partner Investigator, Rothamsted Research UK). Collaborators include: Dr Ian Clarke (Rothamsted Research, UK) and Dr Petra Marschner (University of Adelaide).
6. Spatial distribution of nitrogen processes and microbial communities in arable soils at micro- and nano- scales - European Union (Newcastle University, UK and University of Western Australia).
The overall aim of this project is to improve our understanding of the regulation within arable soils of the fate and cycling of N at micro- and nano-scales. The non-uniform distribution of microbial sources and sinks in a heterogeneous soil structure can lead to the development of spatially complex microenvironments with significant implications for macroscopic behaviour. Unravelling the complexity in soils at micro- and nano-scales requires bridging of the physical and biological sciences and the application of novel imaging approaches. This project is at the forefront of developments in soil science research which link the heterogeneity of the soil’s physical and chemical environment with microbiological approaches. This project provides the opportunity to apply a number of techniques in novel ways to the study of the biological cycling of N in soils. This project combines existing state-of-the art molecular techniques to the measurement of the diversity and activity of biotic communities in soil with novel microscopic and isotopic approaches to provide a comprehensive analysis of N cycling at a micro- and nano-scale in arable soils. Staff associated with this project are: Dr Anke Herrmann (Research Fellow with time allocated 1/3 Newcastle, 2/3 UWA), Dr Daniel Murphy (Investigator, SEGS-UWA), Dr Pauline Grierson (Investigator, Plant Science-UWA), Dr Peta Clode (Investigator, CMM-UWA), Dr Tony O’Donnel (Investigator, Newcastle, UK) and Dr Elizabeth Stockdale (Investigator, Newcastle, UK).
7. Integrating microbiology and climatic drivers to determine triggers for nitrous oxide emissions from arable soils in semi-arid Western Australia - Australian Research Council and WADA.
Increasing nitrous oxide emissions from soil to the atmosphere are a concern as they contribute to global warming and the destruction of the ozone layer. While 70–81% of this increase has been attributed globally to agricultural soils, the factors controlling emissions from arable soils in southern Australia are not well understood. We aim to characterise and model the relationship between the soil microbial community responsible for nitrous oxide emissions and soil water availability. Understanding the processes responsible for nitrous oxide emissions will enable us to change the way we manage our semi-arid soils so as to minimise nitrous oxide emissions. Staff associated with this project are: Dr Daniel Murphy (Chief Investigator), Dr Christoph Hinz (Chief Investigator), Dr Louise Barton (Chief Investigator), Research Associate and PhD student to be appointed.
8. Measurement of paddock-based greenhouse gas emissions from wheat production to improve life cycle assessment of wheat-products - AGO/GRDC project funded to DAWA with partnership agreement to UWA.
Details not disclosed. Staff associated with this project are: Dr Bill Porter (Chief Investigator, DAWA), Dr Louise Barton (Research Fellow, UWA), Ms Renee Buck (Research Officer, UWA), Dr Daniel Murphy (Investigator), Dr Christoph Hinz (Investigator). Numerous other national and international researchers are associated with this project.
9. A sustainable dryland community achieved through proactive research on effective management of the soil resource – GRDC project funded to the LIEBE farming group with agreement to UWA staff.
The primary aim is to develop and promote integrated farm management practices at the paddock and property scale that assist in identifying and alleviating soil constraints (physical, chemical and biological), including gaining an understanding of both temporal and spatial variability. A key issue in this environment is managing water to maximise efficient crop use balanced with minimising drainage and offsite impacts. It is difficult to manage water without situated knowledge of one's soil resource and its interactions with climate and management. Current grower knowledge of the soil resource, including inherent and induced constraints, can be greatly improved. Throughout the time frame of this project, it is planned to quantify and deliver information to growers on the extent and impact of soil constraints, and demonstrate the effects of different management practices and farming systems on these constraints.
Research profile